Index

_

__init__() (khipu.epdsConstructor.epdsConstructor method)

A

add_data_to_tag() (in module khipu.utils)

assign_masstrack_ids_in_khipu() (in module khipu.utils)

B

branch_abstraction() (khipu.model.Khipu method) build_branch_only_grid() (khipu.model.Weavor method) build_diagnostic_tree() (khipu.extended.khipu_diagnosis method)

build_full_grid() (khipu.model.Weavor method) build_khipu() (khipu.model.Khipu method) build_simple_pair_grid() (khipu.model.Weavor method) build_trunk_only_grid() (khipu.model.Weavor method)

C

clean() (khipu.model.Khipu method)

compute_multichaged_patterns() (in module khipu.utils)

D

down_size() (khipu.model.Khipu method)

E

epdsConstructor (class in khipu.epdsConstructor) export_empCpd_khipu_list() (in module khipu.extended) export_json() (khipu.model.Khipu method)

export_khipu_table() (in module khipu.extended) extend_khipu_list() (in module khipu.extended) extended_search() (khipu.model.Khipu method)

F

find_trees_by_datatag_list() (in module khipu.utils)

fitness() (khipu.model.Weavor method) format_to_epds() (khipu.model.Khipu method)

G

get_adduct_edge_pairs() (in module khipu.utils) get_feature_dict() (khipu.model.Khipu method) get_isotope_pattern_name() (in module khipu.utils) get_isotopic_edge_pairs() (in module khipu.utils)

get_khipu_intensities() (khipu.model.Khipu method) get_khipu_mzgrid_print() (khipu.model.Khipu method) get_pruned_network() (khipu.model.Khipu method) graphs_to_khipu_list() (in module khipu.extended)

K

Khipu (class in khipu.model) khipu.epdsConstructor module khipu.extended module khipu.main module khipu.model module

khipu.plot module khipu.test module khipu.utils module khipu_annotate() (in module khipu.extended) khipu_diagnosis (class in khipu.extended)

L

local_read_file() (in module khipu.extended)

M

main() (in module khipu.main) make_edge_tag() (in module khipu.utils) make_expected_adduct_index() (in module khipu.utils) make_grid() (khipu.model.Weavor method) make_peak_dict() (in module khipu.utils) make_peak_tag() (in module khipu.utils) module khipu.epdsConstructor khipu.extended khipu.main khipu.model khipu.plot khipu.test khipu.utils

P

peaklist_to_khipu_list() (in module khipu.extended) peaks_to_epdDict() (khipu.epdsConstructor.epdsConstructor method) peaks_to_networks() (in module khipu.utils) plot() (khipu.model.Khipu method) plot_json_khipu() (in module khipu.plot) plot_khipu_diagram() (khipu.model.Khipu method)

plot_khipugram() (in module khipu.plot) print() (khipu.model.Khipu method) print2() (khipu.model.Khipu method) print3() (khipu.model.Khipu method) print_khipu() (khipu.model.Khipu method) print_khipu_rotated() (khipu.model.Khipu method)

R

read_features_from_text() (in module khipu.utils) realign_isotopes() (in module khipu.utils)

realign_isotopes_reverse() (in module khipu.utils) regress_neutral_mass() (khipu.model.Weavor method)

S

score_graph_on_grid() (khipu.model.Weavor method) score_graph_on_trunk() (khipu.model.Weavor method) select_by_fitness() (khipu.model.Weavor method)

show_trimming() (khipu.extended.khipu_diagnosis method) snap_features_to_grid_by_best_mz() (khipu.extended.khipu_diagnosis method) sort_nodes_by_mz() (khipu.model.Khipu method)

T

test1() (in module khipu.test)

test2() (in module khipu.test) trunk_solver() (khipu.model.Weavor method)

W

Weavor (class in khipu.model)